STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER92015.1Hypothetical protein. (277 aa)    
Predicted Functional Partners:
SEP91570.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
 
 
   0.813
SER92035.1
YbaB/EbfC DNA-binding family protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
       0.771
SEQ24757.1
Hypothetical protein.
  
   0.727
SES33610.1
ABC-2 family transporter protein.
  
     0.717
SEQ15410.1
Trypsin.
  
     0.711
SER49584.1
ABC-2 family transporter protein.
  
     0.705
SER38922.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
 
 
   0.658
SER97148.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
 
 
   0.656
SER37112.1
PPE family protein.
  
   0.653
SER40813.1
Hypothetical protein.
  
 
   0.651
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.