STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER93792.1RNA polymerase sigma factor, sigma-70 family. (801 aa)    
Predicted Functional Partners:
SER98447.1
DNA-binding transcriptional activator of the SARP family.
    0.951
SES14446.1
DNA-binding transcriptional activator of the SARP family.
    0.878
SES13918.1
DNA-binding transcriptional activator of the SARP family.
    0.874
SES45580.1
DNA-binding transcriptional activator of the SARP family.
 
    0.761
SER93484.1
DNA-binding transcriptional activator of the SARP family.
 
    0.760
SEQ30511.1
DNA-binding transcriptional activator of the SARP family.
 
    0.751
SES12480.1
DNA-binding transcriptional activator of the SARP family.
 
    0.749
SER80864.1
DNA-binding transcriptional activator of the SARP family.
    0.748
SER99939.1
DNA-binding transcriptional activator of the SARP family.
 
    0.745
SEP98497.1
DNA-binding transcriptional activator of the SARP family.
 
    0.744
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.