STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES01866.1NACHT domain-containing protein. (950 aa)    
Predicted Functional Partners:
SES01882.1
Small multidrug resistance pump.
       0.768
SEQ52093.1
Helix-turn-helix domain-containing protein.
  
     0.632
SER90573.1
Trypsin-like peptidase domain-containing protein.
  
     0.613
SER39143.1
Hypothetical protein.
  
     0.560
SEQ52069.1
DNA-binding transcriptional activator of the SARP family.
  
     0.558
SES24457.1
Uncharacterized membrane protein HdeD, DUF308 family.
  
     0.541
SER39169.1
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain.
  
     0.524
SEQ81597.1
Protein phosphatase 2C.
  
     0.518
SES13297.1
3-phytase.
  
     0.504
SES05979.1
Hypothetical protein.
  
     0.488
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.