STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES23964.1Predicted dehydrogenase. (348 aa)    
Predicted Functional Partners:
SER62160.1
Methane oxygenase PmoA.
 
     0.973
SES23945.1
Predicted dehydrogenase.
 
     0.867
SEQ58654.1
Sugar phosphate isomerase/epimerase.
 
 
  0.853
SER37677.1
Inosose dehydratase.
 
 
  0.760
SER62100.1
Multiple sugar transport system substrate-binding protein.
 
     0.736
SER62130.1
Predicted dehydrogenase.
  
     0.724
SEQ58714.1
Predicted dehydrogenase.
  
     0.716
SER24863.1
Predicted dehydrogenase.
  
     0.668
SER37818.1
5-deoxy-glucuronate isomerase.
 
  
 0.653
SES23979.1
Hypothetical protein.
       0.642
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.