STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES35216.1Shikimate kinase. (188 aa)    
Predicted Functional Partners:
SEQ59664.1
ANTAR domain-containing protein.
  
     0.529
SEQ01485.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
  
     0.508
SEQ35113.1
Extracellular solute-binding protein.
  
     0.497
SER92472.1
CHAT domain-containing protein.
  
     0.480
SES39574.1
Hypothetical protein.
  
     0.467
SES43499.1
Recombinase zinc beta ribbon domain-containing protein.
  
     0.463
SER46763.1
Animal haem peroxidase.
  
     0.447
SEQ71935.1
META domain-containing protein.
  
     0.445
SER27329.1
Hypothetical protein.
  
  
  0.430
SEP71824.1
Hypothetical protein.
  
     0.427
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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