STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES38616.1Putative transposase of IS4/5 family. (297 aa)    
Predicted Functional Partners:
SES40099.1
Transposase DDE domain-containing protein.
 
     0.634
SER85392.1
PPE family protein.
  
     0.511
SER85472.1
Tfp pilus assembly protein FimV.
  
     0.511
SER73224.1
Cytochrome P450.
  
     0.506
SEP90171.1
Hypothetical protein.
  
     0.468
SEP78274.1
Hypothetical protein.
  
     0.456
SEQ48649.1
Hypothetical protein.
  
     0.450
SES06028.1
Sugar diacid utilization regulator.
  
     0.447
SES38601.1
4'-phosphopantetheinyl transferase EntD (siderophore biosynthesis); Belongs to the P-Pant transferase superfamily.
       0.441
SES38610.1
3',5'-cyclic AMP phosphodiesterase CpdA.
       0.441
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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