STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES44724.1Fibronectin type III domain-containing protein. (553 aa)    
Predicted Functional Partners:
SER84497.1
Hypothetical protein.
 
     0.962
SEQ73802.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
 
    0.905
SES10582.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
 
     0.741
SER07892.1
Cellulose binding domain-containing protein.
  
     0.528
SER85309.1
Collagenase.
 
     0.521
SER73148.1
Choice-of-anchor B domain-containing protein.
  
  
  0.500
SEQ15410.1
Trypsin.
  
     0.496
SES27490.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
    0.495
SER13807.1
Hypothetical protein.
  
     0.489
SER35350.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
 
    0.489
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.