STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ79667.1D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (379 aa)    
Predicted Functional Partners:
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
  
 0.902
EEZ79668.1
Membrane-bound lytic murein transglycosylase B.
 
     0.806
mrdA
Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
  
 
 0.786
EEZ80583.1
Cell division protein FtsI.
  
 
 0.766
EEZ80544.1
Membrane carboxypeptidase, penicillin-binding protein.
   
 
 0.754
murF
UDP-N-acetylmuramyl pentapeptide synthase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
 
 0.740
EEZ80224.1
N-acetyl-anhydromuranmyl-L-alanine amidase.
  
  
 0.707
EEZ79666.1
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase.
 
     0.700
EEZ79823.1
Soluble lytic murein transglycosylase.
   
 
 0.673
EEZ79888.1
Membrane-bound lytic murein transglycosylase B.
 
 
 0.668
Your Current Organism:
uncultured SUP05 cluster
NCBI taxonomy Id: 655186
Other names: u. SUP05 cluster bacterium, uncultured SUP05 cluster bacterium
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