Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFN51754.1 | SFN54486.1 | SAMN04488056_101158 | SAMN04488056_101246 | 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit. | FAD/FMN-containing dehydrogenase. | 0.756 |
SFN51754.1 | SFN68553.1 | SAMN04488056_101158 | SAMN04488056_101684 | 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit. | Glycine/D-amino acid oxidase. | 0.691 |
SFN51754.1 | SFO75426.1 | SAMN04488056_101158 | SAMN04488056_11252 | 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit. | Glutamate synthase (NADPH/NADH) large chain. | 0.819 |
SFN51754.1 | SFO76746.1 | SAMN04488056_101158 | SAMN04488056_112119 | 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit. | Sarcosine oxidase subunit delta. | 0.915 |
SFN51754.1 | SFO76790.1 | SAMN04488056_101158 | SAMN04488056_112121 | 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit. | Sarcosine oxidase subunit gamma. | 0.906 |
SFN51754.1 | gcvP | SAMN04488056_101158 | SAMN04488056_101119 | 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.790 |
SFN54486.1 | SFN51754.1 | SAMN04488056_101246 | SAMN04488056_101158 | FAD/FMN-containing dehydrogenase. | 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit. | 0.756 |
SFN54486.1 | SFN68553.1 | SAMN04488056_101246 | SAMN04488056_101684 | FAD/FMN-containing dehydrogenase. | Glycine/D-amino acid oxidase. | 0.679 |
SFN54486.1 | SFO75426.1 | SAMN04488056_101246 | SAMN04488056_11252 | FAD/FMN-containing dehydrogenase. | Glutamate synthase (NADPH/NADH) large chain. | 0.931 |
SFN54486.1 | SFO76768.1 | SAMN04488056_101246 | SAMN04488056_112120 | FAD/FMN-containing dehydrogenase. | Sarcosine oxidase subunit alpha. | 0.853 |
SFN54486.1 | SFO81221.1 | SAMN04488056_101246 | SAMN04488056_11378 | FAD/FMN-containing dehydrogenase. | Thioredoxin reductase. | 0.756 |
SFN54486.1 | gcvP | SAMN04488056_101246 | SAMN04488056_101119 | FAD/FMN-containing dehydrogenase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.747 |
SFN68553.1 | SFN51754.1 | SAMN04488056_101684 | SAMN04488056_101158 | Glycine/D-amino acid oxidase. | 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit. | 0.691 |
SFN68553.1 | SFN54486.1 | SAMN04488056_101684 | SAMN04488056_101246 | Glycine/D-amino acid oxidase. | FAD/FMN-containing dehydrogenase. | 0.679 |
SFN68553.1 | SFO13244.1 | SAMN04488056_101684 | SAMN04488056_103280 | Glycine/D-amino acid oxidase. | Aminomethyltransferase. | 0.775 |
SFN68553.1 | SFO64953.1 | SAMN04488056_101684 | SAMN04488056_11028 | Glycine/D-amino acid oxidase. | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.707 |
SFN68553.1 | SFO75426.1 | SAMN04488056_101684 | SAMN04488056_11252 | Glycine/D-amino acid oxidase. | Glutamate synthase (NADPH/NADH) large chain. | 0.801 |
SFN68553.1 | SFO76746.1 | SAMN04488056_101684 | SAMN04488056_112119 | Glycine/D-amino acid oxidase. | Sarcosine oxidase subunit delta. | 0.823 |
SFN68553.1 | SFO76768.1 | SAMN04488056_101684 | SAMN04488056_112120 | Glycine/D-amino acid oxidase. | Sarcosine oxidase subunit alpha. | 0.980 |
SFN68553.1 | SFO76790.1 | SAMN04488056_101684 | SAMN04488056_112121 | Glycine/D-amino acid oxidase. | Sarcosine oxidase subunit gamma. | 0.674 |
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