STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN86086.1TRAP transporter, DctM subunit. (425 aa)    
Predicted Functional Partners:
SFN86008.1
C4-dicarboxylate-binding protein DctP.
    0.883
SFN86045.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.801
SFN54579.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.762
SFO97362.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.736
SFO17646.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.731
SFN47490.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.723
SFO76544.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.711
SFN81252.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.705
SFO97770.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.701
SFO43345.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.690
Your Current Organism:
Cohaesibacter marisflavi
NCBI taxonomy Id: 655353
Other names: C. marisflavi, CGMCC 1.9157, Cohaesibacter marisflavi Qu et al. 2011, Cohaesibacter sp. DQHS21, NCCB 100300, strain DQHS21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.