STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN87633.1TRAP transporter, DctM subunit. (430 aa)    
Predicted Functional Partners:
SFN87553.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.937
SFN87589.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.881
SFN87673.1
Gluconolactonase.
 
     0.829
SFO40490.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
     0.700
SFO49585.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
     0.691
SFP04393.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
  
     0.688
SFO63165.1
Acyl transferase domain-containing protein.
     
 0.655
SFN48928.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.613
SFN87479.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
 
     0.612
SFO98394.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
  
     0.601
Your Current Organism:
Cohaesibacter marisflavi
NCBI taxonomy Id: 655353
Other names: C. marisflavi, CGMCC 1.9157, Cohaesibacter marisflavi Qu et al. 2011, Cohaesibacter sp. DQHS21, NCCB 100300, strain DQHS21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.