Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFN96639.1 | SFO08193.1 | SAMN04488056_102547 | SAMN04488056_10391 | Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | Protein SCO1/2. | 0.502 |
SFN96639.1 | SFO13458.1 | SAMN04488056_102547 | SAMN04488056_103288 | Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | Cytochrome c oxidase subunit 3. | 0.991 |
SFN96639.1 | SFO13560.1 | SAMN04488056_102547 | SAMN04488056_103292 | Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.975 |
SFN96639.1 | SFO13584.1 | SAMN04488056_102547 | SAMN04488056_103293 | Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.976 |
SFN96639.1 | SFO47316.1 | SAMN04488056_102547 | SAMN04488056_106224 | Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | Ubiquinol-cytochrome c reductase cytochrome c1 subunit. | 0.966 |
SFN96639.1 | SFO47337.1 | SAMN04488056_102547 | SAMN04488056_106225 | Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | Ubiquinol-cytochrome c reductase cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.995 |
SFN96639.1 | ctaA | SAMN04488056_102547 | SAMN04488056_101700 | Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | Cytochrome c oxidase assembly protein subunit 15; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily. | 0.773 |
SFN96639.1 | ctaB | SAMN04488056_102547 | SAMN04488056_103291 | Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.829 |
SFN96639.1 | ctaG | SAMN04488056_102547 | SAMN04488056_103289 | Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | Cytochrome c oxidase assembly protein subunit 11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family. | 0.465 |
SFO08193.1 | SFN96639.1 | SAMN04488056_10391 | SAMN04488056_102547 | Protein SCO1/2. | Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | 0.502 |
SFO08193.1 | SFO13365.1 | SAMN04488056_10391 | SAMN04488056_103285 | Protein SCO1/2. | Surfeit locus 1 family protein. | 0.770 |
SFO08193.1 | SFO13458.1 | SAMN04488056_10391 | SAMN04488056_103288 | Protein SCO1/2. | Cytochrome c oxidase subunit 3. | 0.577 |
SFO08193.1 | SFO13560.1 | SAMN04488056_10391 | SAMN04488056_103292 | Protein SCO1/2. | Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.550 |
SFO08193.1 | SFO13584.1 | SAMN04488056_10391 | SAMN04488056_103293 | Protein SCO1/2. | Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.966 |
SFO08193.1 | SFO47316.1 | SAMN04488056_10391 | SAMN04488056_106224 | Protein SCO1/2. | Ubiquinol-cytochrome c reductase cytochrome c1 subunit. | 0.468 |
SFO08193.1 | ctaA | SAMN04488056_10391 | SAMN04488056_101700 | Protein SCO1/2. | Cytochrome c oxidase assembly protein subunit 15; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily. | 0.887 |
SFO08193.1 | ctaB | SAMN04488056_10391 | SAMN04488056_103291 | Protein SCO1/2. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.776 |
SFO08193.1 | ctaG | SAMN04488056_10391 | SAMN04488056_103289 | Protein SCO1/2. | Cytochrome c oxidase assembly protein subunit 11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family. | 0.929 |
SFO13365.1 | SFO08193.1 | SAMN04488056_103285 | SAMN04488056_10391 | Surfeit locus 1 family protein. | Protein SCO1/2. | 0.770 |
SFO13365.1 | SFO13458.1 | SAMN04488056_103285 | SAMN04488056_103288 | Surfeit locus 1 family protein. | Cytochrome c oxidase subunit 3. | 0.635 |
page 1 of 6