STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO37275.1Membrane-bound lytic murein transglycosylase A. (371 aa)    
Predicted Functional Partners:
SFO37290.1
DNA-nicking endonuclease, Smr domain.
       0.773
SFO37259.1
Predicted lipid-binding transport protein, Tim44 family.
       0.652
SFO37304.1
Helix-turn-helix domain-containing protein.
       0.640
bamA
Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.512
SFO37243.1
UPF0716 protein FxsA.
       0.488
SFO75426.1
Glutamate synthase (NADPH/NADH) large chain.
      
 0.483
SFO26821.1
Putative Zn-dependent protease, contains TPR repeats.
  
    0.435
SFN57740.1
Hypothetical chaperone protein.
 
   
 0.419
SFO26600.1
Protein of unknown function.
 
     0.414
Your Current Organism:
Cohaesibacter marisflavi
NCBI taxonomy Id: 655353
Other names: C. marisflavi, CGMCC 1.9157, Cohaesibacter marisflavi Qu et al. 2011, Cohaesibacter sp. DQHS21, NCCB 100300, strain DQHS21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.