STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO45523.1Putative DNA primase/helicase. (878 aa)    
Predicted Functional Partners:
SFO45540.1
Hypothetical protein.
       0.773
SFN60418.1
Phage portal protein, HK97 family.
 
     0.646
SFN60383.1
Phage terminase-like protein, large subunit, contains N-terminal HTH domain.
 
     0.636
SFO45447.1
Phage terminase, large subunit GpA.
 
     0.634
SFN60279.1
HNH endonuclease.
 
   
 0.612
SFO38223.1
BRO family, N-terminal domain.
 
     0.600
SFO45413.1
Phage portal protein, lambda family.
 
    0.582
SFN80957.1
Phage portal protein, lambda family.
 
    0.568
SFN81145.1
AAA domain-containing protein.
   
 0.561
SFO45556.1
Hypothetical protein.
       0.558
Your Current Organism:
Cohaesibacter marisflavi
NCBI taxonomy Id: 655353
Other names: C. marisflavi, CGMCC 1.9157, Cohaesibacter marisflavi Qu et al. 2011, Cohaesibacter sp. DQHS21, NCCB 100300, strain DQHS21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.