node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFO51652.1 | rplC | SAMN04488056_107125 | SAMN04488056_104419 | ATP-binding cassette, subfamily F, uup. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.874 |
SFO51652.1 | rplD | SAMN04488056_107125 | SAMN04488056_104418 | ATP-binding cassette, subfamily F, uup. | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | 0.889 |
SFO51652.1 | rplM | SAMN04488056_107125 | SAMN04488056_101706 | ATP-binding cassette, subfamily F, uup. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.871 |
SFO51652.1 | rplT | SAMN04488056_107125 | SAMN04488056_105221 | ATP-binding cassette, subfamily F, uup. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.877 |
SFO51652.1 | rpmA | SAMN04488056_107125 | SAMN04488056_111176 | ATP-binding cassette, subfamily F, uup. | Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.869 |
SFO51652.1 | rpmD | SAMN04488056_107125 | SAMN04488056_104401 | ATP-binding cassette, subfamily F, uup. | LSU ribosomal protein L30P. | 0.880 |
SFO51652.1 | rpsC | SAMN04488056_107125 | SAMN04488056_104413 | ATP-binding cassette, subfamily F, uup. | Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.870 |
SFO51652.1 | rpsG | SAMN04488056_107125 | SAMN04488056_1272 | ATP-binding cassette, subfamily F, uup. | Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.869 |
SFO51652.1 | rpsL | SAMN04488056_107125 | SAMN04488056_1273 | ATP-binding cassette, subfamily F, uup. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.869 |
SFO51652.1 | rpsO | SAMN04488056_107125 | SAMN04488056_105153 | ATP-binding cassette, subfamily F, uup. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.871 |
rplC | SFO51652.1 | SAMN04488056_104419 | SAMN04488056_107125 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | ATP-binding cassette, subfamily F, uup. | 0.874 |
rplC | rplD | SAMN04488056_104419 | SAMN04488056_104418 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | 0.999 |
rplC | rplM | SAMN04488056_104419 | SAMN04488056_101706 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
rplC | rplT | SAMN04488056_104419 | SAMN04488056_105221 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.992 |
rplC | rpmA | SAMN04488056_104419 | SAMN04488056_111176 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.995 |
rplC | rpmD | SAMN04488056_104419 | SAMN04488056_104401 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | LSU ribosomal protein L30P. | 0.998 |
rplC | rpsC | SAMN04488056_104419 | SAMN04488056_104413 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.998 |
rplC | rpsG | SAMN04488056_104419 | SAMN04488056_1272 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.993 |
rplC | rpsL | SAMN04488056_104419 | SAMN04488056_1273 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.994 |
rplC | rpsO | SAMN04488056_104419 | SAMN04488056_105153 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.996 |