STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO55944.1Outer membrane transport energization protein ExbB. (284 aa)    
Predicted Functional Partners:
SFO55961.1
Outer membrane transport energization protein ExbD.
 
 
 0.995
SFO55980.1
Biopolymer transport protein ExbD.
 
 
 0.991
SFO56000.1
Protein TonB.
 
 
 0.988
SFO30834.1
Outer membrane transport energization protein ExbD.
 
 
 0.979
SFO50676.1
Cell division and transport-associated protein TolR (TC 2.C.1.2.1).
 
 
 0.963
SFO30807.1
Biopolymer transport protein ExbD.
 
 
 0.950
SFO30784.1
TonB family C-terminal domain-containing protein.
 
 
 0.925
SFO50696.1
Hypothetical protein.
  
 
 0.884
SFO55927.1
Hypothetical protein.
 
     0.832
SFO55819.1
Outer membrane receptor for ferrienterochelin and colicins.
 
  
 0.723
Your Current Organism:
Cohaesibacter marisflavi
NCBI taxonomy Id: 655353
Other names: C. marisflavi, CGMCC 1.9157, Cohaesibacter marisflavi Qu et al. 2011, Cohaesibacter sp. DQHS21, NCCB 100300, strain DQHS21
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