STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO69797.1Tripartite ATP-independent transporter solute receptor, DctP family. (331 aa)    
Predicted Functional Partners:
SFO69777.1
C4-dicarboxylate transporter, DctM subunit.
 
    0.896
SFO43037.1
TRAP transporter, DctM subunit.
 
    0.821
SFN54517.1
C4-dicarboxylate transporter, DctM subunit.
 
    0.805
SFO97396.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.801
SFO43321.1
C4-dicarboxylate transporter, DctQ subunit.
  
    0.790
SFO43298.1
C4-dicarboxylate transporter, DctM subunit.
  
    0.774
SFN81177.1
C4-dicarboxylate transporter, DctM subunit.
  
    0.766
SFO97693.1
TRAP transporter, DctM subunit.
  
    0.766
SFO17599.1
TRAP transporter, DctM subunit.
  
    0.763
SFO76592.1
TRAP transporter, DctM subunit.
  
    0.762
Your Current Organism:
Cohaesibacter marisflavi
NCBI taxonomy Id: 655353
Other names: C. marisflavi, CGMCC 1.9157, Cohaesibacter marisflavi Qu et al. 2011, Cohaesibacter sp. DQHS21, NCCB 100300, strain DQHS21
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