STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP06834.1Collagenase-like protease, PrtC family. (303 aa)    
Predicted Functional Partners:
SFO29545.1
Putative protease.
  
 0.947
SFP06901.1
Peptidase family U32.
  
 0.946
SFP06942.1
Peptidase family U32.
 
  
 0.939
SFO29525.1
Predicted lipid carrier protein YhbT, contains SCP2 domain.
 
  
 0.859
SFO76931.1
Putative protease.
  
 0.819
SFP06428.1
Respiratory nitrate reductase beta subunit.
  
    0.569
SFP06865.1
Transposase, IS5 family.
       0.554
Your Current Organism:
Cohaesibacter marisflavi
NCBI taxonomy Id: 655353
Other names: C. marisflavi, CGMCC 1.9157, Cohaesibacter marisflavi Qu et al. 2011, Cohaesibacter sp. DQHS21, NCCB 100300, strain DQHS21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.