Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFE68012.1 | SFE68096.1 | SAMN05216283_101741 | SAMN05216283_101743 | Cell surface protein SprA. | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | 0.668 |
SFE68012.1 | SFE68146.1 | SAMN05216283_101741 | SAMN05216283_101744 | Cell surface protein SprA. | Nitroreductase. | 0.452 |
SFE68012.1 | ruvA | SAMN05216283_101741 | SAMN05216283_101742 | Cell surface protein SprA. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.771 |
SFE68096.1 | SFE68012.1 | SAMN05216283_101743 | SAMN05216283_101741 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | Cell surface protein SprA. | 0.668 |
SFE68096.1 | SFE68146.1 | SAMN05216283_101743 | SAMN05216283_101744 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | Nitroreductase. | 0.517 |
SFE68096.1 | SFF50517.1 | SAMN05216283_101743 | SAMN05216283_1086 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.511 |
SFE68096.1 | SFF82120.1 | SAMN05216283_101743 | SAMN05216283_11716 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | Threonine synthase. | 0.717 |
SFE68096.1 | pdxJ | SAMN05216283_101743 | SAMN05216283_11435 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | Pyridoxine 5-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.828 |
SFE68096.1 | rsmA | SAMN05216283_101743 | SAMN05216283_10271 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.482 |
SFE68096.1 | ruvA | SAMN05216283_101743 | SAMN05216283_101742 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.776 |
SFE68096.1 | serC | SAMN05216283_101743 | SAMN05216283_10585 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.889 |
SFE68146.1 | SFE68012.1 | SAMN05216283_101744 | SAMN05216283_101741 | Nitroreductase. | Cell surface protein SprA. | 0.452 |
SFE68146.1 | SFE68096.1 | SAMN05216283_101744 | SAMN05216283_101743 | Nitroreductase. | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | 0.517 |
SFE68146.1 | ruvA | SAMN05216283_101744 | SAMN05216283_101742 | Nitroreductase. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.521 |
SFF50517.1 | SFE68096.1 | SAMN05216283_1086 | SAMN05216283_101743 | Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | 0.511 |
SFF50517.1 | SFF82120.1 | SAMN05216283_1086 | SAMN05216283_11716 | Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | Threonine synthase. | 0.411 |
SFF82120.1 | SFE68096.1 | SAMN05216283_11716 | SAMN05216283_101743 | Threonine synthase. | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | 0.717 |
SFF82120.1 | SFF50517.1 | SAMN05216283_11716 | SAMN05216283_1086 | Threonine synthase. | Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.411 |
SFF82120.1 | serC | SAMN05216283_11716 | SAMN05216283_10585 | Threonine synthase. | Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.868 |
pdxJ | SFE68096.1 | SAMN05216283_11435 | SAMN05216283_101743 | Pyridoxine 5-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | 0.828 |
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