STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF20568.1Hypothetical protein. (808 aa)    
Predicted Functional Partners:
SFF20541.1
Hypothetical protein.
 
     0.840
SFF55551.1
Trehalose 6-phosphate synthase/phosphatase.
  
 0.823
SFF20515.1
Starch-binding associating with outer membrane.
 
     0.677
SFF31734.1
Hypothetical protein.
  
     0.662
SFF11723.1
Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family.
  
     0.645
SFF20621.1
Concanavalin A-like lectin/glucanases superfamily protein.
 
     0.635
SFF20490.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.628
SFF60719.1
Helix-turn-helix domain-containing protein.
  
     0.599
SFF56726.1
Beta-galactosidase/beta-glucuronidase.
  
     0.568
SFF43481.1
Hypothetical protein.
  
     0.555
Your Current Organism:
Sunxiuqinia elliptica
NCBI taxonomy Id: 655355
Other names: Bacteroidetes bacterium DQHS-15, Bacteroidetes bacterium DQHS-4, Bacteroidetes bacterium DQHS-8, CGMCC 1.9156, LMG 25367, LMG:25367, NCCB 100301, S. elliptica, Sunxiuqinia elliptica Qu et al. 2011, strain DQHS4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.