Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFE63769.1 | SFF43987.1 | SAMN05216283_101618 | SAMN05216283_106157 | Threonine dehydratase. | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | 0.802 |
SFE63769.1 | SFF44843.1 | SAMN05216283_101618 | SAMN05216283_106204 | Threonine dehydratase. | Serine O-acetyltransferase. | 0.730 |
SFE63769.1 | SFF82199.1 | SAMN05216283_101618 | SAMN05216283_11719 | Threonine dehydratase. | Aspartate kinase. | 0.910 |
SFE63769.1 | glyA | SAMN05216283_101618 | SAMN05216283_11098 | Threonine dehydratase. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.784 |
SFE63769.1 | ilvA | SAMN05216283_101618 | SAMN05216283_101625 | Threonine dehydratase. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.772 |
SFE63769.1 | metAA | SAMN05216283_101618 | SAMN05216283_107157 | Threonine dehydratase. | Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. | 0.577 |
SFE63769.1 | trpA | SAMN05216283_101618 | SAMN05216283_101767 | Threonine dehydratase. | Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.800 |
SFF43987.1 | SFE63769.1 | SAMN05216283_106157 | SAMN05216283_101618 | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Threonine dehydratase. | 0.802 |
SFF43987.1 | SFF44843.1 | SAMN05216283_106157 | SAMN05216283_106204 | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Serine O-acetyltransferase. | 0.784 |
SFF43987.1 | SFF82199.1 | SAMN05216283_106157 | SAMN05216283_11719 | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Aspartate kinase. | 0.789 |
SFF43987.1 | gcvP | SAMN05216283_106157 | SAMN05216283_10157 | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.651 |
SFF43987.1 | gcvT | SAMN05216283_106157 | SAMN05216283_10583 | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | 0.632 |
SFF43987.1 | glyA | SAMN05216283_106157 | SAMN05216283_11098 | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.880 |
SFF43987.1 | ilvA | SAMN05216283_106157 | SAMN05216283_101625 | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.774 |
SFF43987.1 | metAA | SAMN05216283_106157 | SAMN05216283_107157 | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. | 0.578 |
SFF43987.1 | serC | SAMN05216283_106157 | SAMN05216283_10585 | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.619 |
SFF43987.1 | trpA | SAMN05216283_106157 | SAMN05216283_101767 | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.758 |
SFF44843.1 | SFE63769.1 | SAMN05216283_106204 | SAMN05216283_101618 | Serine O-acetyltransferase. | Threonine dehydratase. | 0.730 |
SFF44843.1 | SFF43987.1 | SAMN05216283_106204 | SAMN05216283_106157 | Serine O-acetyltransferase. | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | 0.784 |
SFF44843.1 | SFF82199.1 | SAMN05216283_106204 | SAMN05216283_11719 | Serine O-acetyltransferase. | Aspartate kinase. | 0.807 |
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