STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF52226.1TonB-linked outer membrane protein, SusC/RagA family. (1169 aa)    
Predicted Functional Partners:
SFF52258.1
Starch-binding associating with outer membrane.
 
     0.940
SFF52273.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
 
     0.797
SFF19822.1
Starch-binding associating with outer membrane.
 
     0.774
SFF68720.1
Starch-binding associating with outer membrane.
 
     0.774
SFF38447.1
Starch-binding associating with outer membrane.
 
     0.772
SFF70523.1
Starch-binding associating with outer membrane.
 
     0.772
SFF58888.1
Starch-binding associating with outer membrane.
 
     0.771
SFF56507.1
Starch-binding associating with outer membrane.
 
     0.768
SFF19648.1
Starch-binding associating with outer membrane.
  
     0.767
SFE42357.1
Starch-binding associating with outer membrane.
 
     0.763
Your Current Organism:
Sunxiuqinia elliptica
NCBI taxonomy Id: 655355
Other names: Bacteroidetes bacterium DQHS-15, Bacteroidetes bacterium DQHS-4, Bacteroidetes bacterium DQHS-8, CGMCC 1.9156, LMG 25367, LMG:25367, NCCB 100301, S. elliptica, Sunxiuqinia elliptica Qu et al. 2011, strain DQHS4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.