Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_0041Conserved hypothetical protein. (499 aa)    
Predicted Functional Partners:
ZPR_0042
Conserved hypothetical protein.
       0.806
ZPR_0040
M23 family peptidase.
       0.774
ZPR_3817
Alpha/beta fold hydrolase.
  
   
 0.748
ZPR_2136
acyl-CoA reductase.
 
 
 0.686
ZPR_0207
Conserved hypothetical protein.
  
     0.649
ZPR_2529
Conserved hypothetical protein.
  
     0.606
ZPR_0488
uroporphyrinogen-III synthase.
  
     0.597
ZPR_0326
Conserved hypothetical protein.
  
     0.574
ZPR_0043
dTDP-glucose 4,6-dehydratase, NAD-dependent epimerase/dehydratase-related protein.
       0.569
ZPR_0044
TuaG-like glycosyl transferase.
       0.562
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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