Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_0057Protein containing tetratricopeptide region. (844 aa)    
Predicted Functional Partners:
ZPR_0590
Conserved hypothetical protein.
  
 
 0.941
ZPR_3926
Conserved hypothetical protein.
  
 
 
 0.905
ZPR_0617
OmpH family outer membrane protein.
  
 
   0.861
ZPR_1687
Gliding motility protein GldI.
  
 
  0.835
ZPR_0935
Conserved hypothetical protein.
  
   
 0.819
ZPR_4148
Conserved hypothetical protein.
  
   
 0.786
ZPR_0058
Conserved hypothetical protein.
     
 0.784
ZPR_4147
Gliding motility protein GldO.
  
   
 0.782
ZPR_4149
Gliding motility protein GldL.
  
   
 0.775
ZPR_0059
Membrane protein.
       0.773
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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