Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_0106S23 ribosomal protein. (96 aa)    
Predicted Functional Partners:
ZPR_0107
Coproporphyrinogen III oxidase.
       0.615
ZPR_0108
Conserved hypothetical protein.
       0.615
ZPR_0094
Conserved hypothetical protein.
  
     0.599
ZPR_0105
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
       0.524
ZPR_1151
Helix-hairpin-helix DNA-binding protein.
  
  
 0.503
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
     
 0.466
ZPR_0109
Conserved hypothetical protein.
       0.450
ZPR_0078
Smf family protein.
  
  
 0.433
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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