STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_0114HTH domain-containing protein. (298 aa)    
Predicted Functional Partners:
ZPR_1279
Bacterial regulatory helix-turn-helix protein.
  
     0.705
ZPR_1687
Gliding motility protein GldI.
  
     0.667
ZPR_0673
AraC family transcription regulator.
  
     0.648
ZPR_2110
Secreted protein.
  
     0.646
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
     0.641
ZPR_3350
AraC family transcription regulator.
  
     0.639
ZPR_0111
uroporphyrinogen-III synthase.
 
     0.602
ZPR_1176
Conserved hypothetical protein.
  
     0.591
ZPR_3352
Transcriptional regulator.
  
     0.578
ZPR_2039
Conserved hypothetical protein.
  
     0.567
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.