Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ZPR_0145Glycosyl hydrolase family protein; Belongs to the glycosyl hydrolase 32 family. (525 aa)    
Predicted Functional Partners:
ZPR_0143
PfkB family carbohydrate kinase.
 
 0.990
ZPR_3192
PfkB family carbohydrate kinase.
 
 
 0.941
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
     
 0.911
ZPR_3196
Glycosyl hydrolase family protein; Belongs to the glycosyl hydrolase 32 family.
  
  
 
0.902
ZPR_3193
Tetratricopeptide repeat-containing SusD/RagB family protein.
  
 
   0.769
ZPR_3198
Sugar-binding sensor histidine kinase/response regulator hybrid.
 
  
 0.766
map
YflG; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.714
ZPR_3194
TonB-dependent outer membrane receptor.
  
     0.638
ZPR_1628
ragB/SusD family protein.
  
 
   0.550
ZPR_0462
Arsenate reductase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
 
 0.548
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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