Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_0147PepSY-associated TM helix. (430 aa)    
Predicted Functional Partners:
ZPR_0148
TonB-dependent siderophore receptor.
 
  
 0.936
ZPR_4048
Putative sulfite reductase flavoprotein component.
  
     0.754
ZPR_4228
Hypothetical protein.
  
     0.632
ZPR_4227
tonB-dependent Receptor Plug domain protein.
 
     0.546
ZPR_1631
fecR protein.
 
     0.500
ZPR_2532
TonB-dependent siderophore receptor.
 
  
 0.464
ZPR_4049
TonB-dependent outer membrane receptor.
 
     0.448
ZPR_0254
fecR protein.
 
     0.438
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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