Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_0193M23 family peptidase. (410 aa)    
Predicted Functional Partners:
ZPR_0191
Conserved hypothetical protein.
       0.773
ZPR_0192
Tryptophan 2,3-dioxygenase.
       0.773
ZPR_1864
M23 family peptidase.
  
     0.677
uppP
Putative undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
    0.657
ZPR_0073
M23 family peptidase.
 
   
 0.652
ZPR_4524
M23 family peptidase.
  
     0.618
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
    0.577
ZPR_0058
Conserved hypothetical protein.
 
   
 0.522
ZPR_0324
Colicin V production protein.
 
     0.509
ZPR_0092
Bifunctional transglycosylase/transpeptidase penicillin-binding protein.
  
   
 0.461
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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