Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ZPR_0344Cysteine desulfurase-like protein. (407 aa)    
Predicted Functional Partners:
ZPR_0213
FeS assembly ATPase SufC.
  
 0.920
ZPR_0215
Cysteine desulfurase activator complex subunit SufB.
 
 0.904
ZPR_0212
FeS assembly protein SufD.
 
 0.899
ZPR_0209
Protein containing fe-S metabolism associated domain.
 
 0.853
ZPR_0345
Secreted dipeptidyl-peptidase IV family protein.
       0.773
ZPR_1044
Probable secreted protein.
    
   0.513
ZPR_3540
Endonuclease/exonuclease/phosphatase family protein.
    
   0.513
ZPR_0346
Aminopeptidase, putative.
       0.462
ZPR_0342
Conserved hypothetical protein.
       0.400
ZPR_0343
Conserved hypothetical protein.
       0.400
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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