Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_0352Hypothetical protein. (497 aa)    
Predicted Functional Partners:
ZPR_0351
tonB-dependent Receptor Plug domain protein.
 
     0.944
ZPR_2488
TonB-dependent receptor, plug.
  
 
   0.749
ZPR_1020
TonB-dependent receptor, plug.
  
 
   0.741
ZPR_4662
TonB-dependent receptor, plug.
  
 
   0.722
ZPR_4383
tonB-dependent Receptor Plug domain protein.
  
     0.701
ZPR_4661
RagB/SusD domain-containing protein.
  
     0.698
ZPR_3478
Glycoside hydrolase, catalytic core; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.694
ZPR_3484
Putative outer membrane protein, probably involved in nutrient binding.
  
 
   0.684
ZPR_0353
Hypothetical protein.
       0.676
ZPR_1629
tonB-dependent Receptor Plug domain protein.
  
 
   0.662
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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