Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ZPR_0442Transcriptional repressor of the ribose operon. (347 aa)    
Predicted Functional Partners:
ZPR_3938
Glutamate synthase (NADPH) large subunit.
    
 
 0.690
ZPR_2902
Putative LacI-family transcriptional regulator.
  
     0.644
ZPR_0443
tonB-dependent Receptor Plug domain protein.
 
     0.533
ZPR_0444
Putative outer membrane protein.
 
     0.520
ribB
Bifunctional protein: GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
   0.435
guaA
Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP.
    
   0.435
ZPR_0765
Transcriptional regulator, GlpR family protein.
  
   
 0.427
ZPR_3198
Sugar-binding sensor histidine kinase/response regulator hybrid.
  
  
 0.411
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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