Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_0445Glycosidase, PH1107-related protein. (384 aa)    
Predicted Functional Partners:
ZPR_0444
Putative outer membrane protein.
 
     0.792
ZPR_0446
Xylose permease; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
       0.742
ZPR_0443
tonB-dependent Receptor Plug domain protein.
 
     0.731
ZPR_4182
Glycosidase, PH1107-related protein.
 
    
0.520
ZPR_3506
Conserved hypothetical protein.
  
     0.453
ZPR_0682
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.417
ZPR_1355
Universal stress protein.
  
     0.409
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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