Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_0463NAD dependent epimerase. (216 aa)    
Predicted Functional Partners:
ZPR_1401
Cytochrome c oxidase, subunit II.
   
 
 0.926
ZPR_2137
Ferredoxin-like protein.
   
 0.774
ZPR_1407
Cytochrome b/b6 domain protein.
   
 
 0.723
ZPR_2301
Probable cytochrome oxidase subunit (cbb3-type); Belongs to the heme-copper respiratory oxidase family.
    
 
 0.707
ZPR_1406
Rieske (2Fe-2S) domain-containing protein.
  
 
 0.592
ZPR_4052
Rieske.
  
 
 0.592
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.558
ZPR_2769
Acyl-carrier protein.
   
 0.558
pcm
protein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
   
   0.539
ZPR_0508
2Fe-2S ferredoxin.
    
 
 0.525
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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