Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_0625OMPP1/FadL/TodX family outer membrane protein transport protein. (416 aa)    
Predicted Functional Partners:
ZPR_0626
Outer membrane protein.
 
     0.947
ZPR_4517
Conserved hypothetical protein.
 
 
   0.716
ZPR_2116
Conserved hypothetical protein.
 
     0.685
ZPR_3247
Nuclear transition protein.
   
 
 0.658
ZPR_0618
Surface antigen D15 family outer membrane protein.
 
 
 
 0.648
ZPR_0109
Conserved hypothetical protein.
  
     0.631
ZPR_4534
Carboxypeptidase-like protein, regulatory region.
  
 
 
 0.629
ZPR_4563
Membrane protein.
  
     0.614
ZPR_3696
HTH_3 family transcriptional regulator protein.
  
     0.598
ZPR_0933
Surface antigen protein.
  
 
 
 0.580
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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