Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_0641Conserved hypothetical protein. (169 aa)    
Predicted Functional Partners:
ZPR_1131
ABC-type transporter ATP-binding protein.
  
 
 0.959
ZPR_2863
Permease.
 
 
 0.904
ZPR_0895
Predicted permease.
 
 
 0.829
ZPR_0640
TPR repeat-containing protein.
 
     0.812
ZPR_0933
Surface antigen protein.
  
  
 0.735
ZPR_0639
Conserved hypothetical protein.
 
   
 0.733
ZPR_2752
Conserved hypothetical protein.
  
     0.718
ZPR_0644
PpiC-type secreted peptidyl-prolyl cis-trans isomerase.
 
    0.711
ZPR_2861
Outer membrane lipoprotein carrier protein.
  
   
 0.707
ZPR_4155
Conserved hypothetical protein.
  
     0.677
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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