Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ZPR_0643Cystathionine beta-synthase. (429 aa)    
Predicted Functional Partners:
ZPR_0642
Hypothetical protein.
       0.773
ZPR_0640
TPR repeat-containing protein.
 
     0.763
ZPR_0641
Conserved hypothetical protein.
       0.658
ZPR_0644
PpiC-type secreted peptidyl-prolyl cis-trans isomerase.
       0.546
ZPR_0593
TonB family protein.
  
     0.538
ZPR_4543
Biopolymer transport protein ExbD/TolR.
  
     0.513
coaX
Pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
       0.506
ZPR_0639
Conserved hypothetical protein.
       0.506
ZPR_4545
ExbB-like MotA/TolQ/ExbB family biopolymer transport protein.
  
     0.503
ZPR_1354
TonB.
  
     0.486
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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