STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_0816TonB-dependent outer membrane receptor. (754 aa)    
Predicted Functional Partners:
ZPR_0815
L-sorbosone dehydrogenase.
 
     0.723
ZPR_0817
Hypothetical protein.
       0.648
ZPR_3556
anti-FecI sigma factor, FecR.
 
 
 0.460
ZPR_0389
FecR family protein.
 
 
 0.449
ZPR_1752
anti-FecI sigma factor, FecR.
 
 
 0.437
ZPR_0254
fecR protein.
 
 
 0.435
ZPR_0381
anti-FecI sigma factor, FecR.
 
 
 0.435
ZPR_0592
Membrane protein.
  
     0.420
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.