Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_0843tonB dependent receptor. (578 aa)    
Predicted Functional Partners:
ZPR_0842
Tetratricopeptide repeat protein.
 
     0.930
ZPR_2110
Secreted protein.
  
    0.775
ZPR_3932
Conserved hypothetical protein.
 
 
 0.764
ZPR_2752
Conserved hypothetical protein.
  
     0.757
ZPR_3593
Conserved hypothetical protein.
  
     0.755
ZPR_0489
Membrane protein.
  
     0.752
ZPR_2039
Conserved hypothetical protein.
  
     0.750
ZPR_0057
Protein containing tetratricopeptide region.
  
     0.745
ZPR_1179
Conserved hypothetical protein.
  
     0.743
ZPR_4541
Secreted protein.
  
     0.741
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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