Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_0908Conserved hypothetical protein. (651 aa)    
Predicted Functional Partners:
ZPR_0907
tonB-dependent Receptor Plug domain protein.
 
 
   0.924
ZPR_0909
Conserved hypothetical protein.
 
     0.830
ZPR_0910
Glycosyl Hydrolase.
 
     0.816
ZPR_0905
tonB dependent receptor.
 
     0.624
ZPR_0911
Beta-galactosidase.
       0.614
ZPR_0904
tonB-dependent Receptor Plug domain protein.
 
 
   0.597
ZPR_4715
Outer membrane protein Omp121.
  
 
   0.562
ZPR_1381
tonB dependent receptor.
 
 
   0.560
ZPR_4714
Conserved hypothetical protein.
  
 
   0.538
ZPR_2488
TonB-dependent receptor, plug.
 
 
   0.483
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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