rpsO protein (Zunongwangia profunda) - STRING interaction network

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rpsO

30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa)

Predicted Functional Partners:

rpsQ

0.998

rpsI

0.997

rpsR

0.996

rpsD

0.995

rpsC

0.995

rpsB

0.994

rpmA

0.993

rplM

0.992

rplQ

0.992

rpsM

0.992

Your Current Organism:

Zunongwangia profunda

NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplQ	ZPR_0516	ZPR_3849	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L17.	0.994
rplM	rpmA	ZPR_0516	ZPR_4482	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.993
rplM	rpsB	ZPR_0516	ZPR_0514	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.996
rplM	rpsC	ZPR_0516	ZPR_3869	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.993
rplM	rpsD	ZPR_0516	ZPR_3851	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.995
rplM	rpsI	ZPR_0516	ZPR_0515	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rplM	rpsM	ZPR_0516	ZPR_3853	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.	0.993
rplM	rpsO	ZPR_0516	ZPR_0930	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.992
rplM	rpsQ	ZPR_0516	ZPR_3866	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Putative 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.991
rplM	rpsR	ZPR_0516	ZPR_2121	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.991
rplQ	rplM	ZPR_3849	ZPR_0516	50S ribosomal protein L17.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.994
rplQ	rpmA	ZPR_3849	ZPR_4482	50S ribosomal protein L17.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.991
rplQ	rpsB	ZPR_3849	ZPR_0514	50S ribosomal protein L17.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.984
rplQ	rpsC	ZPR_3849	ZPR_3869	50S ribosomal protein L17.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.993
rplQ	rpsD	ZPR_3849	ZPR_3851	50S ribosomal protein L17.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.998
rplQ	rpsI	ZPR_3849	ZPR_0515	50S ribosomal protein L17.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.990
rplQ	rpsM	ZPR_3849	ZPR_3853	50S ribosomal protein L17.	30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.	0.994
rplQ	rpsO	ZPR_3849	ZPR_0930	50S ribosomal protein L17.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.992
rplQ	rpsQ	ZPR_3849	ZPR_3866	50S ribosomal protein L17.	Putative 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.995
rplQ	rpsR	ZPR_3849	ZPR_2121	50S ribosomal protein L17.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.988

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