Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_0993Putative transmembrane protein. (665 aa)    
Predicted Functional Partners:
ZPR_0994
Putative nitrate/nitrite DNA-binding response regulator.
 
 
 0.962
ZPR_3162
Putative nitrate/nitrite DNA-binding response regulator.
 
 
 0.843
ZPR_4481
Putative nitrate/nitrite DNA-binding response regulator.
 
 
 0.841
ZPR_0427
Two-component system response regulator.
 
 
 0.837
ZPR_3052
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
 
 0.836
ZPR_2205
Two-component response regulator.
 
 
 0.835
ZPR_3824
Two-component system response regulator.
 
 
 0.832
ZPR_2805
Two-component system response regulator.
 
 
 0.805
ZPR_0992
Hypothetical protein.
       0.655
ZPR_1616
Response regulator receiver domain-containing protein.
 
 
 0.447
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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