STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_1237Conserved hypothetical protein. (314 aa)    
Predicted Functional Partners:
ZPR_1236
DNA polymerase III subunit epsilon.
       0.782
ZPR_1238
Putative hydrolase.
       0.762
ZPR_1240
CinA-like competence-damaged protein; Belongs to the CinA family.
       0.761
ZPR_1239
Conserved hypothetical protein.
       0.757
ZPR_1354
TonB.
  
     0.541
ZPR_1235
Lipoamide acyltransferase component of 2-oxoacid dehydrogenase complex.
       0.531
ZPR_1623
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.514
ZPR_1802
Putative outer membrane protein.
  
     0.514
ZPR_2229
Putative outer membrane protein.
  
     0.489
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.479
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.