Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_1500Transcriptional regulator, AraC family protein. (285 aa)    
Predicted Functional Partners:
ZPR_1510
Putative AraC-family regulatory protein.
  
   0.687
ZPR_0673
AraC family transcription regulator.
  
     0.596
ZPR_1346
Transcriptional regulator, AraC family protein.
  
     0.576
ZPR_1501
Conserved hypothetical protein.
       0.556
ZPR_1560
Transcriptional regulator, AraC family protein.
  
     0.550
ZPR_3261
Transcriptional regulator.
  
     0.488
ZPR_1502
Cation efflux protein; putative membrane protein.
 
     0.455
ZPR_1499
Conserved hypothetical protein.
  
    0.443
ZPR_0531
AraC family transcription regulator.
  
     0.435
ZPR_4227
tonB-dependent Receptor Plug domain protein.
  
     0.421
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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