Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ZPR_1671Conserved hypothetical protein. (617 aa)    
Predicted Functional Partners:
ZPR_1670
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.822
ZPR_1463
Signal peptidase I; Belongs to the peptidase S26 family.
 
   
 0.774
ZPR_1669
TPR repeat-containing protein.
 
   
 0.754
ZPR_0933
Surface antigen protein.
  
  
 0.719
ZPR_1243
Conserved hypothetical protein.
  
     0.696
ZPR_3782
Membrane or secreted protein.
  
     0.678
ZPR_2329
Fumarate hydratase.
  
     0.666
ZPR_0842
Tetratricopeptide repeat protein.
 
  
 0.658
ZPR_0590
Conserved hypothetical protein.
  
     0.657
ZPR_0616
OmpH family outer membrane protein.
  
   
 0.623
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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