Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_1771TraM-like protein. (309 aa)    
Predicted Functional Partners:
ZPR_1770
Conserved protein found in conjugate transposon TraN.
 
     0.947
ZPR_1772
Conserved protein found in conjugate transposon TraK.
 
     0.926
ZPR_1775
TraG-like protein.
 
     0.923
ZPR_4005
TraK-like membrane or secreted protein.
 
     0.781
ZPR_4116
Conserved protein found in conjugate transposon TraK.
 
     0.781
ZPR_1266
Conserved protein found in conjugate transposon.
 
     0.780
ZPR_1765
Mobilisation protein C.
 
     0.780
ZPR_4002
TraG-like protein.
 
     0.780
ZPR_4007
Conserved protein found in conjugate transposon TraN.
 
     0.780
ZPR_4009
Mobilisation protein C.
 
     0.780
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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