Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_1850ZIP family metal transporter. (222 aa)    
Predicted Functional Partners:
ZPR_1849
Conserved hypothetical protein.
 
     0.823
ZPR_1851
Putative RNA methylase family protein; Belongs to the methyltransferase superfamily.
 
     0.721
ZPR_4151
Arginase; Belongs to the arginase family.
  
     0.661
ZPR_1866
Conserved hypothetical protein.
  
     0.637
ZPR_2045
Membrane protein.
  
     0.632
ZPR_3601
Secreted protein.
  
     0.631
ZPR_4617
Transcription elongation factor.
  
    0.576
ZPR_3814
Secreted protein.
  
     0.572
ZPR_4448
Conserved hypothetical protein.
  
     0.541
ZPR_1853
Conserved hypothetical protein.
  
     0.528
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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