STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_1963SusC, outer membrane protein involved in starch binding. (1008 aa)    
Predicted Functional Partners:
ZPR_1964
SusD, outer membrane protein.
 
     0.933
ZPR_1015
Conserved hypothetical protein.
 
     0.687
ZPR_1965
Alkaline phosphatase; Belongs to the alkaline phosphatase family.
 
     0.633
ZPR_1966
Alkaline phosphatase; Belongs to the alkaline phosphatase family.
 
     0.603
ZPR_0702
Putative outer membrane protein, probably involved in nutrient binding.
 
     0.593
ZPR_4382
ragB/SusD family protein.
 
     0.593
ZPR_1624
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.591
ZPR_3481
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.545
ZPR_3189
ragB/SusD family protein.
  
     0.520
ZPR_2625
Membrane protein.
  
     0.518
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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