STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_2152Transcriptional regulator. (343 aa)    
Predicted Functional Partners:
ZPR_2996
Xylulose kinase.
 
 
 
 0.738
ZPR_3938
Glutamate synthase (NADPH) large subunit.
    
 
 0.690
ZPR_2151
Transcriptional regulator.
 
    
0.664
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
     
 0.653
kduI
Putative 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
  
  
 0.651
uxaC
Uronate isomerase.
  
  
 0.647
uxaC-2
Uronate isomerase.
  
  
 0.647
ZPR_2961
KduD.
    
 
 0.640
ZPR_2902
Putative LacI-family transcriptional regulator.
  
     0.639
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
     
 0.624
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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