Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ZPR_2218Putative transposase; Belongs to the 'phage' integrase family. (410 aa)    
Predicted Functional Partners:
ZPR_1276
Putative DNA-binding protein.
 
     0.762
ZPR_2233
Putative DNA-binding protein.
 
     0.761
ZPR_3560
Putative DNA-binding protein.
 
     0.756
ZPR_4100
Putative DNA-binding protein.
 
     0.750
ZPR_1786
Putative DNA binding protein.
 
     0.741
ZPR_1275
Conserved hypothetical protein.
 
     0.615
ZPR_3494
Conserved hypothetical protein.
 
     0.559
ZPR_1290
Tyrosine type site-specific recombinase; Belongs to the 'phage' integrase family.
  
     0.519
ZPR_3272
Tyrosine type site-specific recombinase; Belongs to the 'phage' integrase family.
  
     0.512
ZPR_3424
DNA primase.
 
   
 0.449
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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